STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX85493.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
EPX85494.1
Beta-galactosidase/beta-glucuronidase.
     0.988
EPX86689.1
6-phosphofructokinase.
   
    0.802
EPX85491.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.
       0.773
EPX85492.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
       0.773
EPX87763.1
Alpha-L-arabinofuranosidase.
 
  
 0.687
EPX85495.1
Xylose isomerase-like TIM barrel.
 
  
  0.641
EPX87882.1
Alpha-L-rhamnosidase.
 
 0.620
EPX85490.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.
  
    0.584
EPX85497.1
Hypothetical protein.
 
  
  0.572
EPX82540.1
Beta-galactosidase.
   
 0.555
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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