STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420765_00612Unannotated protein. (237 aa)    
Predicted Functional Partners:
GCA_000420765_01427
Unannotated protein.
  
 
 0.995
GCA_000420765_02207
Unannotated protein.
  
 0.967
GCA_000420765_00983
Unannotated protein.
  
 
 0.830
GCA_000420765_02260
Unannotated protein.
  
 
 0.830
GCA_000420765_00614
Unannotated protein.
     
 0.801
GCA_000420765_00110
Unannotated protein.
     
 0.794
GCA_000420765_00613
Unannotated protein.
       0.782
GCA_000420765_00610
Unannotated protein.
     
 0.605
GCA_000420765_00609
Unannotated protein.
       0.594
GCA_000420765_00611
Unannotated protein.
       0.594
Your Current Organism:
Sandarakinorhabdus limnophila
NCBI taxonomy Id: 1123240
Other names: S. limnophila DSM 17366, Sandarakinorhabdus limnophila DSM 17366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.