STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420765_01963Unannotated protein. (261 aa)    
Predicted Functional Partners:
GCA_000420765_01344
Unannotated protein.
 0.975
GCA_000420765_02291
Unannotated protein.
   
  0.948
GCA_000420765_01246
Unannotated protein.
    
  0.806
GCA_000420765_00280
Unannotated protein.
    
  0.805
GCA_000420765_00646
Unannotated protein.
    
  0.804
GCA_000420765_01454
Unannotated protein.
    
  0.804
GCA_000420765_00658
Unannotated protein.
    
  0.798
GCA_000420765_00661
Unannotated protein.
   
  0.798
GCA_000420765_01475
Unannotated protein.
    
  0.798
GCA_000420765_00407
Unannotated protein.
    
  0.797
Your Current Organism:
Sandarakinorhabdus limnophila
NCBI taxonomy Id: 1123240
Other names: S. limnophila DSM 17366, Sandarakinorhabdus limnophila DSM 17366
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.