STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000423645_00982Unannotated protein. (108 aa)    
Predicted Functional Partners:
GCA_000423645_00981
Unannotated protein.
       0.610
GCA_000423645_02231
Unannotated protein.
  
     0.582
GCA_000423645_00979
Unannotated protein.
       0.572
GCA_000423645_00980
Unannotated protein.
       0.572
GCA_000423645_02317
Unannotated protein.
  
     0.541
GCA_000423645_00249
Unannotated protein.
  
     0.486
GCA_000423645_00419
Unannotated protein.
  
     0.469
GCA_000423645_01410
Unannotated protein.
  
    0.440
GCA_000423645_02356
Unannotated protein.
  
     0.416
Your Current Organism:
Sediminimonas qiaohouensis
NCBI taxonomy Id: 1123247
Other names: S. qiaohouensis DSM 21189, Sediminimonas qiaohouensis DSM 21189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.