STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN60079.1Acetoin utilization deacetylase AcuC. (313 aa)    
Predicted Functional Partners:
SIN59735.1
Flavin containing amine oxidoreductase.
    
 0.981
SIN64978.1
Caspase domain-containing protein.
  
 
 0.909
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.902
SIO17395.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.895
SIN64933.1
Hypothetical protein.
    
 0.883
SIN59818.1
Uridine kinase; Belongs to the uridine kinase family.
   
  0.793
SIN65885.1
ATP-binding cassette, subfamily B.
   
 0.768
SIO12881.1
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.765
SIO00897.1
Hypothetical protein.
    
 0.760
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 0.760
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.