STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF89488.1Hemolysin-type calcium-binding repeat-containing protein. (971 aa)    
Predicted Functional Partners:
SDG56514.1
Serralysin.
 
 
  0.895
SDG60988.1
Matrixin.
 
  0.892
SDG10717.1
Regulatory P domain of the subtilisin-like proprotein convertase; Belongs to the peptidase S8 family.
 
 0.861
SDF04152.1
ATP-binding cassette, subfamily C, LapB.
 
 
 0.842
SDG56129.1
Protein of unknown function.
 
  0.839
SDF23853.1
Membrane fusion protein, epimerase transport system.
 
 
 0.805
SDF04101.1
Membrane fusion protein, adhesin transport system.
 
 
 0.801
SDG62240.1
Type I secretion membrane fusion protein, HlyD family.
 
 
 0.799
SDF89713.1
Cadherin domain-containing protein.
 
 
  0.780
SDG61008.1
ATP-binding cassette, subfamily C.
 
 
 0.756
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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