STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG56543.1D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. (368 aa)    
Predicted Functional Partners:
SHH20213.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
  
 
0.873
SHG48712.1
Penicillin-binding protein 1A.
   
 
 0.848
SHG94617.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 0.806
SHG56102.1
Penicillin-binding protein, 1A family.
     
 0.761
SHG56573.1
Polysaccharide deacetylase family sporulation protein PdaB.
  
    0.710
SHG56604.1
VanW like protein.
       0.705
SHG56512.1
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
       0.701
SHG56452.1
Sporulation protein, YlmC/YmxH family.
       0.694
dut
dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
    0.691
SHH15378.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
 
      0.642
Your Current Organism:
Thermosyntropha lipolytica
NCBI taxonomy Id: 1123382
Other names: T. lipolytica DSM 11003, Thermosyntropha lipolytica DSM 11003
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