STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP21094.1Deazaflavin-dependent oxidoreductase, nitroreductase family. (137 aa)    
Predicted Functional Partners:
SFP21066.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.773
SFO29605.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.770
SFO66327.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.656
SFP21122.1
DNA-binding transcriptional regulator, MarR family.
       0.548
SFQ30982.1
Protein of unknown function.
  
     0.524
SFO25366.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
  
     0.499
SFO29582.1
Transcriptional regulator, TetR family.
 
     0.487
SFQ30930.1
Hypothetical protein.
  
     0.438
SFO04104.1
Hypothetical protein.
  
     0.428
SFQ30914.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.