STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCC_00385RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (852 aa)    
Predicted Functional Partners:
RCC_01773
Uncharacterized protein.
   
 0.993
RCC_02379
Related to DNA-directed RNA polymerase II chain RPB3.
    
 0.975
RCC_08419
Related to DNA-directed RNA polymerase II chain Rpb7.
    
 0.971
RCC_02360
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.962
RCC_03336
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.961
RCC_02566
Uncharacterized protein.
    
 0.953
RCC_10464
Related to DNA-directed RNA polymerase II chain.
    
 0.941
RCC_08592
Uncharacterized protein.
    
 0.941
RCC_03627
Related to transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1.
   
 0.933
RCC_05060
Uncharacterized protein.
    
 0.932
Your Current Organism:
Ramularia collocygni
NCBI taxonomy Id: 112498
Other names: CBS 101180, Ophiocladium hordei, Ovularia hordei, R. collo-cygni, Ramularia collo-cygni
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