STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCC_01413Hcy-binding domain-containing protein. (306 aa)    
Predicted Functional Partners:
RCC_03599
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
 
 0.879
RCC_07204
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
 
 0.879
RCC_06869
Probable methionine synthase.
  
 
 0.865
RCC_00096
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 
 0.852
RCC_01987
Homoserine dehydrogenase.
  
 
 0.849
RCC_03624
Probable cystathionine beta-lyase.
  
 
 0.848
RCC_07367
Aspartokinase.
  
 
 0.848
RCC_04921
Probable O-acetylhomoserine (Thiol)-lyase.
  
 
 0.846
RCC_03070
Probable methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase.
    
 0.843
RCC_02405
Probable cystathionine gamma-lyase.
  
 
 0.842
Your Current Organism:
Ramularia collocygni
NCBI taxonomy Id: 112498
Other names: CBS 101180, Ophiocladium hordei, Ovularia hordei, R. collo-cygni, Ramularia collo-cygni
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