STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCC_09993Protein kinase domain-containing protein. (660 aa)    
Predicted Functional Partners:
RCC_05571
Autophagy-related protein.
   
 0.956
RCC_04991
Related to Beclin 1 (Coiled-coil myosin-like BCL2-interacting protein).
    
 0.952
RCC_00077
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.951
RCC_10002
Phosphatidylinositol 3-kinase VPS34.
    
 0.951
RCC_10717
Related to protein kinase homolog VPS15.
    
 0.951
RCC_11132
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
   
 0.949
RCC_08284
Uncharacterized protein.
   
 0.948
RCC_09121
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.
   
 
 0.908
RCC_07710
Uncharacterized protein.
    
 0.881
RCC_00757
Uncharacterized protein.
   
 
 0.879
Your Current Organism:
Ramularia collocygni
NCBI taxonomy Id: 112498
Other names: CBS 101180, Ophiocladium hordei, Ovularia hordei, R. collo-cygni, Ramularia collo-cygni
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