STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerC_3Phage integrase family protein; Belongs to the 'phage' integrase family. (194 aa)    
Predicted Functional Partners:
clpQ
ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.552
pyrE_2
comF family protein.
   
    0.523
nifJ_4
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
  0.516
nifJ_3
Pyruvate:ferredoxin oxidoreductase.
    
  0.516
nifJ_5
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.516
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.516
SDF03752.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.516
nifJ_7
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.516
SDF69397.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg.
    
  0.516
SDF14307.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.511
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.