STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE_03016DegT/DnrJ/EryC1/StrS aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (372 aa)    
Predicted Functional Partners:
AJE_03011
Hypothetical protein.
 
     0.951
AJE_02886
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.923
AJE_02421
COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
 0.863
AJE_03021
Glycosyl transferase; COG1647 Esterase/lipase.
 
    0.863
AJE_02491
dTDP-D-glucose-4,6-dehydratase; COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.834
AJE_03026
Hydrolase; COG1217 Predicted membrane GTPase involved in stress response.
 
     0.819
AJE_02456
Oxidoreductase family, NAD-binding Rossmann fold family protein; COG0673 Predicted dehydrogenases and related proteins.
  
 
 0.798
AJE_03001
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.700
AJE_02956
COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
     0.695
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.685
Your Current Organism:
Alishewanella jeotgali
NCBI taxonomy Id: 1129374
Other names: A. jeotgali KCTC 22429, Alishewanella jeotgali KCTC 22429, Alishewanella jeotgali MS1, Alishewanella jeotgali str. KCTC 22429, Alishewanella jeotgali strain KCTC 22429, Alishewanella sp. MS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.