node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFU00255.1 | AFU02210.1 | O3I_011470 | O3I_021255 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | ABC transporter; COG0178 Excinuclease ATPase subunit. | 0.557 |
AFU00255.1 | AFU04876.1 | O3I_011470 | O3I_034635 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | COG0210 Superfamily I DNA and RNA helicases. | 0.892 |
AFU00255.1 | AFU05488.1 | O3I_011470 | O3I_037705 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | COG0210 Superfamily I DNA and RNA helicases. | 0.724 |
AFU00255.1 | mfd | O3I_011470 | O3I_036950 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.685 |
AFU00255.1 | recA | O3I_011470 | O3I_030025 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.638 |
AFU00255.1 | ruvB | O3I_011470 | O3I_028835 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.650 |
AFU00255.1 | uvrB | O3I_011470 | O3I_012960 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.966 |
AFU02208.1 | AFU02209.1 | O3I_021245 | O3I_021250 | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Putative amidotransferase; COG0367 Asparagine synthase (glutamine-hydrolyzing). | 0.711 |
AFU02208.1 | AFU02210.1 | O3I_021245 | O3I_021255 | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | ABC transporter; COG0178 Excinuclease ATPase subunit. | 0.555 |
AFU02209.1 | AFU02208.1 | O3I_021250 | O3I_021245 | Putative amidotransferase; COG0367 Asparagine synthase (glutamine-hydrolyzing). | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.711 |
AFU02209.1 | AFU02210.1 | O3I_021250 | O3I_021255 | Putative amidotransferase; COG0367 Asparagine synthase (glutamine-hydrolyzing). | ABC transporter; COG0178 Excinuclease ATPase subunit. | 0.637 |
AFU02210.1 | AFU00255.1 | O3I_021255 | O3I_011470 | ABC transporter; COG0178 Excinuclease ATPase subunit. | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.557 |
AFU02210.1 | AFU02208.1 | O3I_021255 | O3I_021245 | ABC transporter; COG0178 Excinuclease ATPase subunit. | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.555 |
AFU02210.1 | AFU02209.1 | O3I_021255 | O3I_021250 | ABC transporter; COG0178 Excinuclease ATPase subunit. | Putative amidotransferase; COG0367 Asparagine synthase (glutamine-hydrolyzing). | 0.637 |
AFU02210.1 | AFU04876.1 | O3I_021255 | O3I_034635 | ABC transporter; COG0178 Excinuclease ATPase subunit. | COG0210 Superfamily I DNA and RNA helicases. | 0.544 |
AFU02210.1 | AFU05488.1 | O3I_021255 | O3I_037705 | ABC transporter; COG0178 Excinuclease ATPase subunit. | COG0210 Superfamily I DNA and RNA helicases. | 0.601 |
AFU02210.1 | mfd | O3I_021255 | O3I_036950 | ABC transporter; COG0178 Excinuclease ATPase subunit. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.686 |
AFU02210.1 | recA | O3I_021255 | O3I_030025 | ABC transporter; COG0178 Excinuclease ATPase subunit. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.605 |
AFU02210.1 | ruvB | O3I_021255 | O3I_028835 | ABC transporter; COG0178 Excinuclease ATPase subunit. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.531 |
AFU02210.1 | uvrB | O3I_021255 | O3I_012960 | ABC transporter; COG0178 Excinuclease ATPase subunit. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.975 |