Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SHJG_0188 | SHJG_0475 | Hydrolase. | Transcriptional regulator. | 0.492 |
SHJG_0475 | SHJG_0188 | Transcriptional regulator. | Hydrolase. | 0.492 |
SHJG_0475 | SHJG_0476 | Transcriptional regulator. | Hypothetical protein. | 0.569 |
SHJG_0475 | SHJG_0571 | Transcriptional regulator. | LuxR-family transcriptional regulator. | 0.454 |
SHJG_0475 | SHJG_1052 | Transcriptional regulator. | Transcriptional regulator. | 0.454 |
SHJG_0475 | SHJG_1268 | Transcriptional regulator. | Putative LuxR-family transcriptional regulator. | 0.454 |
SHJG_0475 | SHJG_5926 | Transcriptional regulator. | Pathway specific regulatory protein. | 0.455 |
SHJG_0475 | SHJG_6618 | Transcriptional regulator. | Aminoglycoside 2'-N-acetyltransferase. | 0.494 |
SHJG_0475 | SHJG_6836 | Transcriptional regulator. | Two-component system sensor kinase. | 0.902 |
SHJG_0475 | SHJG_7344 | Transcriptional regulator. | Regulatory protein LuxR. | 0.544 |
SHJG_0475 | SHJG_8054 | Transcriptional regulator. | Hypothetical protein. | 0.503 |
SHJG_0476 | SHJG_0475 | Hypothetical protein. | Transcriptional regulator. | 0.569 |
SHJG_0571 | SHJG_0475 | LuxR-family transcriptional regulator. | Transcriptional regulator. | 0.454 |
SHJG_0571 | SHJG_6836 | LuxR-family transcriptional regulator. | Two-component system sensor kinase. | 0.437 |
SHJG_1052 | SHJG_0475 | Transcriptional regulator. | Transcriptional regulator. | 0.454 |
SHJG_1052 | SHJG_6836 | Transcriptional regulator. | Two-component system sensor kinase. | 0.437 |
SHJG_1268 | SHJG_0475 | Putative LuxR-family transcriptional regulator. | Transcriptional regulator. | 0.454 |
SHJG_1268 | SHJG_6836 | Putative LuxR-family transcriptional regulator. | Two-component system sensor kinase. | 0.437 |
SHJG_5926 | SHJG_0475 | Pathway specific regulatory protein. | Transcriptional regulator. | 0.455 |
SHJG_6618 | SHJG_0475 | Aminoglycoside 2'-N-acetyltransferase. | Transcriptional regulator. | 0.494 |
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