STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJG_1784Dioxygenase. (308 aa)    
Predicted Functional Partners:
SHJG_1783
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.955
SHJG_1786
Acetoacetate decarboxylase.
 
     0.955
SHJG_1788
Hypothetical protein.
 
     0.915
SHJG_1785
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.891
SHJG_1789
L-glutamine synthetase.
 
   
 0.885
SHJG_1782
Putative TetR-family transcriptional regulator.
       0.825
SHJG_1790
Cytochrome P450.
 
     0.776
SHJG_1779
Peptidase C26.
 
     0.771
SHJG_1778
MarR-family transcriptional regulator.
 
   
 0.755
SHJG_1787
Putative ferredoxin reductase.
 
    0.753
Your Current Organism:
Streptomyces hygroscopicus jinggangensis
NCBI taxonomy Id: 1133850
Other names: S. hygroscopicus subsp. jinggangensis 5008, Streptomyces hygroscopicus subsp. jinggangensis 5008, Streptomyces hygroscopicus subsp. jinggangensis str. 5008, Streptomyces hygroscopicus subsp. jinggangensis strain 5008
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