STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm27RNA-binding protein 27-like. (993 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1 domain-containing protein-like.
   
 
 0.647
SH3RF2
Uncharacterized protein.
      
 0.546
mtrex
Superkiller viralicidic activity 2-like 2-like.
   
 
 0.521
Z043_120775
Polyadenylate-binding protein 2-like.
    
 
 0.504
pabpn1l
RRM domain-containing protein.
    
 
 0.504
LOC108930093
Polyadenylate-binding protein 2-like.
    
 
 0.504
yipf5
Protein YIPF.
      
 0.479
Z043_124013
RNA-binding protein with serine-rich domain 1-like.
    
 
 0.432
Rnps1
RNA-binding protein with serine-rich domain 1-like.
    
 
 0.432
Skiv2l
Helicase SKI2W-like.
   
 
 0.413
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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