STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_00125TRNA/rRNA methyltransferase. (168 aa)    
Predicted Functional Partners:
D778_01582
LSU ribosomal protein L21p.
 
 
   0.838
D778_02122
LSU ribosomal protein L13p (L13Ae).
 
 
   0.795
D778_00713
LSU ribosomal protein L3p (L3e).
 
 
   0.790
D778_00687
LSU ribosomal protein L17p.
  
   0.767
D778_00185
LSU ribosomal protein L11p (L12e).
   
   0.766
D778_00702
LSU ribosomal protein L24p (L26e).
  
   0.764
rsfS
Iojap protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
   
   0.764
rplO
LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.762
D778_00437
tRNA (guanosine(18)-2'-O)-methyltransferase.
  
     0.749
D778_00865
GTPase and tRNA-U34 5-formylation enzyme TrmE.
    
 
 0.723
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.