STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D778_02110Hypothetical protein. (208 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor RpoN.
       0.816
D778_00698
LSU ribosomal protein L6p (L9e).
    
  0.752
D778_00384
Hypothetical protein.
  
     0.734
D778_02833
Hypothetical protein.
  
     0.730
D778_01156
O-succinylbenzoic acid--CoA ligase.
    
 0.712
D778_02772
Long-chain-fatty-acid--CoA ligase.
    
 0.712
D778_02524
Hypothetical protein.
  
     0.710
D778_01720
Hypothetical protein.
 
     0.705
D778_01123
Hypothetical protein.
  
     0.698
D778_01872
Hypothetical protein.
  
     0.681
Your Current Organism:
Xanthomarina gelatinilytica
NCBI taxonomy Id: 1137281
Other names: Formosa sp. AK20, JCM 18821, MTCC 11705, X. gelatinilytica, Xanthomarina gelatinilytica Vaidya et al. 2015, strain AK20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.