STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB56142.1Transcriptional regulator, XRE family. (185 aa)    
Predicted Functional Partners:
ABB56143.1
DnaK protein-like; Belongs to the heat shock protein 70 family.
 
   
 0.839
ABB56146.1
Hypothetical protein.
 
     0.802
ABB56141.1
DNA-binding ferritin-like protein (oxidative damage protectant)-like; Belongs to the Dps family.
     
 0.776
ABB57731.1
Conserved hypothetical protein.
  
     0.774
ABB57383.1
Conserved hypothetical protein.
  
     0.772
ABB58429.1
Conserved hypothetical protein.
  
     0.772
ABB57022.1
Conserved hypothetical protein.
  
     0.768
ABB58406.1
Conserved hypothetical protein.
  
     0.765
ABB57278.1
Conserved hypothetical protein.
  
     0.764
ABB57966.1
Conserved hypothetical protein.
  
     0.761
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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