STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB56410.1Protein of unknown function DUF140; Belongs to the MlaE permease family. (264 aa)    
Predicted Functional Partners:
ABB56382.1
ATPase.
 0.999
ABB56383.1
Putative ABC transport system substrate-binding protein.
 
 0.998
ABB58151.1
Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
   
   0.892
ABB56958.1
Outer envelope membrane protein.
 
     0.690
ABB56545.1
ATPase.
  
  0.681
ABB56411.1
Conserved hypothetical protein.
       0.665
ABB56590.1
Conserved hypothetical protein.
  
   
 0.663
ABB57818.1
Conserved hypothetical protein.
     
 0.660
ABB56412.1
Conserved hypothetical protein.
       0.583
ABB56544.1
Conserved hypothetical protein YCF84.
  
   
 0.580
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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