STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB56684.1Conserved hypothetical protein. (529 aa)    
Predicted Functional Partners:
zds
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7' (By similarity).
  
  
 0.970
ABB57276.1
Carotene isomerase.
 
 
 0.946
ABB58469.1
Beta-carotene hydroxylase.
   
 
 0.938
crtL
Lycopene cyclase (CrtL-type); Catalyzes the double cyclization reaction which converts lycopene to beta-carotene and neurosporene to beta-zeacarotene.
     
  0.900
ABB56685.1
Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family-like; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.773
ycf4
Photosystem I assembly related protein; Seems to be required for the assembly of the photosystem I complex; Belongs to the Ycf4 family.
       0.773
ABB56116.1
Conserved hypothetical protein.
  
     0.769
ABB57288.1
Conserved hypothetical protein.
  
     0.767
ABB57558.1
Conserved hypothetical protein YCF49.
  
     0.766
ABB56197.1
Hypothetical protein.
  
     0.761
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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