Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB57008.1 | ABB57032.1 | Synpcc7942_0978 | Synpcc7942_1002 | ferredoxin-NADP oxidoreductase. | Photosystem I reaction center subunit II. | 0.632 |
ABB57008.1 | ABB58572.1 | Synpcc7942_0978 | Synpcc7942_2542 | ferredoxin-NADP oxidoreductase. | Putative cytochrome C6-2. | 0.666 |
ABB57008.1 | ABB58611.1 | Synpcc7942_0978 | Synpcc7942_2581 | ferredoxin-NADP oxidoreductase. | Ferredoxin (2Fe-2S). | 0.629 |
ABB57008.1 | cp12 | Synpcc7942_0978 | Synpcc7942_0361 | ferredoxin-NADP oxidoreductase. | Conserved hypothetical protein. | 0.605 |
ABB57008.1 | narB | Synpcc7942_0978 | Synpcc7942_1235 | ferredoxin-NADP oxidoreductase. | Assimilatory nitrate reductase (ferredoxin) precursor; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.899 |
ABB57008.1 | petF | Synpcc7942_0978 | Synpcc7942_1499 | ferredoxin-NADP oxidoreductase. | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.935 |
ABB57008.1 | petJ | Synpcc7942_0978 | Synpcc7942_0239 | ferredoxin-NADP oxidoreductase. | Cytochrome C6 soluble cytochrome f; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.736 |
ABB57008.1 | petJ-2 | Synpcc7942_0978 | Synpcc7942_1630 | ferredoxin-NADP oxidoreductase. | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.701 |
ABB57008.1 | psaC | Synpcc7942_0978 | Synpcc7942_0535 | ferredoxin-NADP oxidoreductase. | Photosystem I iron-sulfurcenter; Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptor [...] | 0.629 |
ABB57008.1 | psaL | Synpcc7942_0978 | Synpcc7942_2342 | ferredoxin-NADP oxidoreductase. | Hypothetical protein. | 0.660 |
ABB57032.1 | ABB57008.1 | Synpcc7942_1002 | Synpcc7942_0978 | Photosystem I reaction center subunit II. | ferredoxin-NADP oxidoreductase. | 0.632 |
ABB57032.1 | ABB58611.1 | Synpcc7942_1002 | Synpcc7942_2581 | Photosystem I reaction center subunit II. | Ferredoxin (2Fe-2S). | 0.666 |
ABB57032.1 | petF | Synpcc7942_1002 | Synpcc7942_1499 | Photosystem I reaction center subunit II. | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.993 |
ABB57032.1 | petJ | Synpcc7942_1002 | Synpcc7942_0239 | Photosystem I reaction center subunit II. | Cytochrome C6 soluble cytochrome f; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.504 |
ABB57032.1 | petJ-2 | Synpcc7942_1002 | Synpcc7942_1630 | Photosystem I reaction center subunit II. | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.493 |
ABB57032.1 | psaC | Synpcc7942_1002 | Synpcc7942_0535 | Photosystem I reaction center subunit II. | Photosystem I iron-sulfurcenter; Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptor [...] | 0.999 |
ABB57032.1 | psaL | Synpcc7942_1002 | Synpcc7942_2342 | Photosystem I reaction center subunit II. | Hypothetical protein. | 0.999 |
ABB58572.1 | ABB57008.1 | Synpcc7942_2542 | Synpcc7942_0978 | Putative cytochrome C6-2. | ferredoxin-NADP oxidoreductase. | 0.666 |
ABB58572.1 | petF | Synpcc7942_2542 | Synpcc7942_1499 | Putative cytochrome C6-2. | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.535 |
ABB58572.1 | petJ | Synpcc7942_2542 | Synpcc7942_0239 | Putative cytochrome C6-2. | Cytochrome C6 soluble cytochrome f; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.911 |
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