STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB57337.1Putative ABC-2 type transport system permease protein. (271 aa)    
Predicted Functional Partners:
sek0043
ATPase.
 
  
 0.868
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.746
ABB57339.1
Conserved hypothetical protein; Belongs to the methylenetetrahydrofolate reductase family.
       0.746
ABB57689.1
Nitroreductase.
  
  
 0.700
cmpR
ndhF3 operon transcriptional regulator; Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions; Belongs to the LysR transcriptional regulatory family.
  
  
 0.564
ABB58178.1
ATPase.
 
  
 0.564
ABB57336.1
Conserved hypothetical protein.
       0.545
ABB56597.1
FHA domain containing protein.
  
     0.461
ABB57335.1
ATPase; Belongs to the ABC transporter superfamily.
  
    0.461
ABB56100.1
ATPase.
  
  
 0.450
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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