STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB57423.1Histone deacetylase/AcuC/AphA family protein-like. (304 aa)    
Predicted Functional Partners:
ABB58486.1
Conserved hypothetical protein.
    
 0.768
ABB56904.1
DEAD/DEAH box helicase-like.
    
 0.752
SEM0037
ATP-binding region, ATPase-like.
    
 0.737
ABB56401.1
Putative flavin-containing monoamine oxidase.
    
 0.650
ABB56976.1
UDP-galactopyranose mutase.
    
 0.650
ABB57424.1
PDZ/DHR/GLGF.
 
     0.614
ABB56449.1
ATPase.
    
 0.613
ABB57650.1
ATPase.
    
 0.613
ABB58063.1
Conserved hypothetical protein.
    
 0.597
ABB57007.1
Phosphoribulokinase.
   
  0.588
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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