STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmLCarbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. (99 aa)    
Predicted Functional Partners:
ccmK
Putative carboxysome assembly protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
 
 
 
 0.997
ccmO
Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family.
 
 
 
 0.996
ccmM
Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator.
   
 
 0.982
ABB56317.1
Carbon dioxide concentrating mechanism protein CcmK.
 
 
 
 0.965
ABB56316.1
Carbon dioxide concentrating mechanism protein CcmK.
 
 
 
 0.963
cbbL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
     
 0.889
ABB56552.1
Hypothetical protein.
 
 
 
 0.844
ABB57454.1
Carbon dioxide concentrating mechanism protein.
   
 
 0.781
ABB57457.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
   
 
 0.655
icfA
Carbonate dehydratase; Reversible hydration of carbon dioxide. Essential to photosynthetic carbon dioxide fixation; Belongs to the beta-class carbonic anhydrase family.
      
 0.635
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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