Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB56552.1 | ABB57454.1 | Synpcc7942_0520 | Synpcc7942_1424 | Hypothetical protein. | Carbon dioxide concentrating mechanism protein. | 0.746 |
ABB56552.1 | ABB57457.1 | Synpcc7942_0520 | Synpcc7942_1427 | Hypothetical protein. | Ribulose 1,5-bisphosphate carboxylase small subunit. | 0.571 |
ABB56552.1 | ABB57565.1 | Synpcc7942_0520 | Synpcc7942_1535 | Hypothetical protein. | Possible Rubisco chaperonin. | 0.746 |
ABB56552.1 | SEN0013 | Synpcc7942_0520 | Synpcc7942_1834 | Hypothetical protein. | Conserved hypothetical protein. | 0.608 |
ABB56552.1 | cbbL | Synpcc7942_0520 | Synpcc7942_1426 | Hypothetical protein. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.405 |
ABB56552.1 | ccmL | Synpcc7942_0520 | Synpcc7942_1422 | Hypothetical protein. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.844 |
ABB56552.1 | ccmM | Synpcc7942_0520 | Synpcc7942_1423 | Hypothetical protein. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.578 |
ABB56552.1 | ccmO | Synpcc7942_0520 | Synpcc7942_1425 | Hypothetical protein. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.870 |
ABB56552.1 | icfA | Synpcc7942_0520 | Synpcc7942_1447 | Hypothetical protein. | Carbonate dehydratase; Reversible hydration of carbon dioxide. Essential to photosynthetic carbon dioxide fixation; Belongs to the beta-class carbonic anhydrase family. | 0.526 |
ABB57454.1 | ABB56552.1 | Synpcc7942_1424 | Synpcc7942_0520 | Carbon dioxide concentrating mechanism protein. | Hypothetical protein. | 0.746 |
ABB57454.1 | ABB57457.1 | Synpcc7942_1424 | Synpcc7942_1427 | Carbon dioxide concentrating mechanism protein. | Ribulose 1,5-bisphosphate carboxylase small subunit. | 0.691 |
ABB57454.1 | ABB57565.1 | Synpcc7942_1424 | Synpcc7942_1535 | Carbon dioxide concentrating mechanism protein. | Possible Rubisco chaperonin. | 0.934 |
ABB57454.1 | SEN0013 | Synpcc7942_1424 | Synpcc7942_1834 | Carbon dioxide concentrating mechanism protein. | Conserved hypothetical protein. | 0.609 |
ABB57454.1 | cbbL | Synpcc7942_1424 | Synpcc7942_1426 | Carbon dioxide concentrating mechanism protein. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.576 |
ABB57454.1 | ccmL | Synpcc7942_1424 | Synpcc7942_1422 | Carbon dioxide concentrating mechanism protein. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.781 |
ABB57454.1 | ccmM | Synpcc7942_1424 | Synpcc7942_1423 | Carbon dioxide concentrating mechanism protein. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.995 |
ABB57454.1 | ccmO | Synpcc7942_1424 | Synpcc7942_1425 | Carbon dioxide concentrating mechanism protein. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.864 |
ABB57454.1 | icfA | Synpcc7942_1424 | Synpcc7942_1447 | Carbon dioxide concentrating mechanism protein. | Carbonate dehydratase; Reversible hydration of carbon dioxide. Essential to photosynthetic carbon dioxide fixation; Belongs to the beta-class carbonic anhydrase family. | 0.625 |
ABB57457.1 | ABB56552.1 | Synpcc7942_1427 | Synpcc7942_0520 | Ribulose 1,5-bisphosphate carboxylase small subunit. | Hypothetical protein. | 0.571 |
ABB57457.1 | ABB57454.1 | Synpcc7942_1427 | Synpcc7942_1424 | Ribulose 1,5-bisphosphate carboxylase small subunit. | Carbon dioxide concentrating mechanism protein. | 0.691 |
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