Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB56384.1 | ABB56655.1 | Synpcc7942_0352 | Synpcc7942_0623 | Methionine sulfoxide reductase B. | Thioredoxin reductase. | 0.496 |
ABB56384.1 | ABB56873.1 | Synpcc7942_0352 | Synpcc7942_0842 | Methionine sulfoxide reductase B. | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | 0.567 |
ABB56384.1 | trxA | Synpcc7942_0352 | Synpcc7942_1830 | Methionine sulfoxide reductase B. | Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. | 0.723 |
ABB56655.1 | ABB56384.1 | Synpcc7942_0623 | Synpcc7942_0352 | Thioredoxin reductase. | Methionine sulfoxide reductase B. | 0.496 |
ABB56655.1 | ABB56873.1 | Synpcc7942_0623 | Synpcc7942_0842 | Thioredoxin reductase. | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | 0.666 |
ABB56655.1 | ABB56920.1 | Synpcc7942_0623 | Synpcc7942_0890 | Thioredoxin reductase. | Glutamate synthase (ferredoxin). | 0.892 |
ABB56655.1 | ABB57764.1 | Synpcc7942_0623 | Synpcc7942_1734 | Thioredoxin reductase. | Ferredoxin-thioredoxin reductase catalytic chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin. | 0.408 |
ABB56655.1 | ABB58479.1 | Synpcc7942_0623 | Synpcc7942_2449 | Thioredoxin reductase. | 1-Cys peroxiredoxin. | 0.977 |
ABB56655.1 | trxA | Synpcc7942_0623 | Synpcc7942_1830 | Thioredoxin reductase. | Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. | 0.726 |
ABB56655.1 | tuf | Synpcc7942_0623 | Synpcc7942_0884 | Thioredoxin reductase. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.557 |
ABB56873.1 | ABB56384.1 | Synpcc7942_0842 | Synpcc7942_0352 | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | Methionine sulfoxide reductase B. | 0.567 |
ABB56873.1 | ABB56655.1 | Synpcc7942_0842 | Synpcc7942_0623 | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | Thioredoxin reductase. | 0.666 |
ABB56873.1 | ABB56920.1 | Synpcc7942_0842 | Synpcc7942_0890 | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | Glutamate synthase (ferredoxin). | 0.470 |
ABB56873.1 | trxA | Synpcc7942_0842 | Synpcc7942_1830 | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. | 0.686 |
ABB56920.1 | ABB56655.1 | Synpcc7942_0890 | Synpcc7942_0623 | Glutamate synthase (ferredoxin). | Thioredoxin reductase. | 0.892 |
ABB56920.1 | ABB56873.1 | Synpcc7942_0890 | Synpcc7942_0842 | Glutamate synthase (ferredoxin). | NADPH-glutathione reductase; Maintains high levels of reduced glutathione. | 0.470 |
ABB56920.1 | ABB58479.1 | Synpcc7942_0890 | Synpcc7942_2449 | Glutamate synthase (ferredoxin). | 1-Cys peroxiredoxin. | 0.464 |
ABB56920.1 | trxA | Synpcc7942_0890 | Synpcc7942_1830 | Glutamate synthase (ferredoxin). | Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. | 0.781 |
ABB56920.1 | tuf | Synpcc7942_0890 | Synpcc7942_0884 | Glutamate synthase (ferredoxin). | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.597 |
ABB57007.1 | cbbL | Synpcc7942_0977 | Synpcc7942_1426 | Phosphoribulokinase. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.954 |
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