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rpmE protein (Synechococcus elongatus PCC7942) - STRING interaction network
"rpmE" - 50S ribosomal protein L31 in Synechococcus elongatus PCC7942
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE50S ribosomal protein L31; Binds the 23S rRNA (77 aa)    
Predicted Functional Partners:
rps9
annotation not available (135 aa)
   
 
  0.998
rpmB
annotation not available (78 aa)
   
 
  0.998
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (151 aa)
   
 
  0.998
rplQ
annotation not available (116 aa)
   
 
  0.998
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (98 aa)
   
 
  0.997
rpsP
annotation not available (82 aa)
   
 
  0.996
rpmI
annotation not available (66 aa)
   
 
  0.996
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (127 aa)
   
 
  0.995
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (137 aa)
   
 
  0.995
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites (125 aa)
   
 
  0.995
Your Current Organism:
Synechococcus elongatus PCC7942
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus elongatus PCC7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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