STRINGSTRING
srpM protein (Synechococcus elongatus PCC7942) - STRING interaction network
"srpM" - annotation not available in Synechococcus elongatus PCC7942
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpMannotation not available (266 aa)    
Predicted Functional Partners:
srpL
annotation not available (407 aa)
 
  0.996
srpK
annotation not available (270 aa)
 
  0.992
srpJ
annotation not available (353 aa)
 
          0.890
srpF
annotation not available (175 aa)
 
          0.884
cmpD
Bicarbonate transport ATP-binding protein CmpD; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Responsible for energy coupling to the transport system (Probable) (278 aa)
   
  0.803
nrtA
Nitrate transport protein NrtA; Essential component of the nitrate-transporting system. May be the substrate-binding protein (443 aa)
 
   
  0.790
cynD
annotation not available (289 aa)
   
  0.741
nrtD
Nitrate transport ATP-binding protein NrtD; Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system (274 aa)
   
  0.737
ABB58137.1
annotation not available (529 aa)
 
   
  0.694
nrtC
Nitrate transport ATP-binding protein NrtC; Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system (659 aa)
   
  0.644
Your Current Organism:
Synechococcus elongatus PCC7942
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus elongatus PCC7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
Server load: low (12%) [HD]