STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (352 aa)    
Predicted Functional Partners:
mvaD
Diphosphomevalonate decarboxylase.
 
  
 0.989
mvaA
hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
   
 0.967
idsA1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.942
idsA
Putative farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.934
crtE
Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.928
mvk
Mevalonate kinase.
 
   
 0.901
mvaS
hydroxymethylglutaryl-CoA synthase.
 
  
 0.757
AFE07740.1
Class V aminotransferase.
  
 0.693
AFE04649.1
Putative phosphomevalonate kinase.
 
   
 0.686
aceB
Malate synthase; Belongs to the malate synthase family.
  
  
 0.605
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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