STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbSRibulose bisphosphate carboxylase small chain (RuBisCO small subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (139 aa)    
Predicted Functional Partners:
cbbL
Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit); RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.999
cbbL-2
Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit); RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.998
cbbP
Phosphoribulokinase (Phosphopentokinase) (PRKase) (PRK); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.988
cbbS-2
Ribulose bisphosphate carboxylase small chain (RuBisCO small subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
0.935
cbbZ
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.926
cbbK
Phosphoglycerate kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phosphoglycerate kinase family.
    
 0.919
BRADO4011
Putative phosphoglycolate phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
    
 0.916
BRADO0021
Putative haloacid dehalogenase-like hydrolase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.910
BRADO1661
Putative CbbX-like protein, containing AAA-ATPase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.910
cbbR
RuBisCO operon transcriptional regulatory protein, LysR family; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.806
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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