STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apcEPhycobilisome core-membrane linker polypeptide; This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity (By similarity). (896 aa)    
Predicted Functional Partners:
apcC
Phycobilisome small core linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer (By similarity).
 
 
 
 0.998
apcD
Allophycocyanin alpha chain; Sly1015600.
  
 
 
 0.993
cpcA
Phycocyanin alpha chain; Sly1017830.
  
 
 
 0.991
apcF
Allophycocyanin beta chain; Sly1004730.
  
 
 
0.991
cpcB
Phycocyanin beta chain; Sly1017820.
  
 
 
 0.990
apcB
Allophycocyanin beta chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers.
 
 
 
0.983
apcA
Allophycocyanin alpha chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers.
 
 
 
0.979
cpcG1
Phycobilisome rod-core linker polypeptide, phycocyanin-associated; Sly1005100; Belongs to the phycobilisome linker protein family.
  
 
 
0.953
cpcC1
Phycobilisome rod linker polypeptide, phycoerythrocyanin-associated; Sly1017850; Belongs to the phycobilisome linker protein family.
  
 
 
0.917
cpcD
Phycobilisome small rod capping linker polypeptide, phycocyanin-associated; Sly1017860.
  
   
 0.896
Your Current Organism:
Synechocystis sp. PCC6714
NCBI taxonomy Id: 1147
Other names: Aphanocapsa sp. (strain 5.3A), Aphanocapsa sp. 5-3A, Aphanocapsa sp. 5.3A, S. sp. PCC 6714, Synechocystis sp. (ATCC 27178), Synechocystis sp. (PCC 6714), Synechocystis sp. (strain PCC 6714), Synechocystis sp. ATCC 27178, Synechocystis sp. PCC 6714, Synechocystis sp. SAG 92.79, Synechocystis sp. UTCC 98, Synechocystis sp. UTEX 2470
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