STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll0558ORF_ID:sll0558; hypothetical protein; Belongs to the ycf53 family. (233 aa)    
Predicted Functional Partners:
slr1958
ORF_ID:slr1958; unknown protein.
      
 0.979
chlH
Mg-chelatase subunit; ORF_ID:slr1055.
  
   
 0.848
chlD
Mg chelatase subunit; Involved in chlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
   
 0.821
chlI
Mg chelatase subunit; Involved in chlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
      
 0.784
slr1699
ORF_ID:slr1699; hypothetical protein.
  
     0.771
psb13
Photosystem II 13 kD protein; ORF_ID:sll1398; Belongs to the Psb28 family.
  
     0.769
psbO
Photosystem II manganese-stabilizing polypeptide; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII.
  
     0.764
ftrC
Ferredoxin-thioredoxin reductase, catalytic chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
  
     0.764
ycf36
Ycf36 protein; ORF_ID:sll0584; hypothetical protein.
  
     0.762
sll1399
ORF_ID:sll1399; hypothetical protein.
  
     0.761
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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