STRINGSTRING
slr1488 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr1488" - ABC transporter in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1488ABC transporter (605 aa)    
Predicted Functional Partners:
SYNGTS_0030
Regulatory protein PchR (330 aa)
 
     
  0.856
sll1528
Hypothetical protein (996 aa)
   
 
  0.729
sll1864
Chloride channel protein (899 aa)
   
 
  0.707
ycf46
Hypothetical protein (499 aa)
     
  0.703
slr0374
Cell division cycle protein (501 aa)
     
  0.703
ank
Erythroid ankyrin (441 aa)
       
    0.698
slr0086
Hypothetical protein (531 aa)
     
  0.678
dnaK1
DnaK protein; Acts as a chaperone (692 aa)
     
  0.678
dnaK2
DnaK protein; Acts as a chaperone (636 aa)
     
  0.678
dnaK3
DnaK protein; Acts as a chaperone (771 aa)
     
  0.678
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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