STRINGSTRING
slr1113 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr1113" - ABC transporter in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1113ABC transporter (332 aa)    
Predicted Functional Partners:
ycf38
Conserved hypothetical protein Ycf38 (294 aa)
   
  0.855
sll0778
ABC transporter (790 aa)
   
0.845
slr1501
Hypothetical protein (225 aa)
         
  0.842
slr0347
Hypothetical protein (261 aa)
   
 
  0.824
sll1107
Hypothetical protein (258 aa)
   
 
  0.820
slr1114
Hypothetical protein (585 aa)
         
  0.794
slr0753
Probable transport protein (449 aa)
   
     
  0.689
sll1898
Hypothetical protein (332 aa)
       
    0.684
sll1392
Hypothetical protein (203 aa)
         
  0.665
ccsA
C-type cytochrome synthesis protein; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment (334 aa)
       
  0.647
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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