Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gspE | gspF | gene:10499792 | gene:10499447 | General secretion pathway protein E; ORF_ID:slr0063. | General secretion pathway protein F; ORF_ID:slr0162. | 0.955 |
gspE | hofD | gene:10499792 | gene:10497497 | General secretion pathway protein E; ORF_ID:slr0063. | Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.957 |
gspE | pilC | gene:10499792 | gene:10499448 | General secretion pathway protein E; ORF_ID:slr0063. | Pilin biogenesis protein; ORF_ID:slr0163. | 0.989 |
gspE | pilM | gene:10499792 | gene:10499151 | General secretion pathway protein E; ORF_ID:slr0063. | Membrane protein; ORF_ID:slr1274. | 0.979 |
gspE | pilT | gene:10499792 | gene:10499319 | General secretion pathway protein E; ORF_ID:slr0063. | Twitching mobility protein; ORF_ID:sll1533. | 0.581 |
gspE | pilT-2 | gene:10499792 | gene:10499446 | General secretion pathway protein E; ORF_ID:slr0063. | Twitching motility protein; ORF_ID:slr0161. | 0.547 |
gspE | slr1456 | gene:10499792 | gene:10500422 | General secretion pathway protein E; ORF_ID:slr0063. | General secretion pathway protein G; ORF_ID:slr1456. | 0.770 |
gspE-2 | gspF | gene:10500055 | gene:10499447 | General secretion pathway protein E; ORF_ID:slr0079. | General secretion pathway protein F; ORF_ID:slr0162. | 0.955 |
gspE-2 | hofD | gene:10500055 | gene:10497497 | General secretion pathway protein E; ORF_ID:slr0079. | Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.955 |
gspE-2 | pilC | gene:10500055 | gene:10499448 | General secretion pathway protein E; ORF_ID:slr0079. | Pilin biogenesis protein; ORF_ID:slr0163. | 0.985 |
gspE-2 | pilM | gene:10500055 | gene:10499151 | General secretion pathway protein E; ORF_ID:slr0079. | Membrane protein; ORF_ID:slr1274. | 0.978 |
gspE-2 | pilT | gene:10500055 | gene:10499319 | General secretion pathway protein E; ORF_ID:slr0079. | Twitching mobility protein; ORF_ID:sll1533. | 0.957 |
gspE-2 | pilT-2 | gene:10500055 | gene:10499446 | General secretion pathway protein E; ORF_ID:slr0079. | Twitching motility protein; ORF_ID:slr0161. | 0.612 |
gspE-2 | slr1456 | gene:10500055 | gene:10500422 | General secretion pathway protein E; ORF_ID:slr0079. | General secretion pathway protein G; ORF_ID:slr1456. | 0.785 |
gspF | gspE | gene:10499447 | gene:10499792 | General secretion pathway protein F; ORF_ID:slr0162. | General secretion pathway protein E; ORF_ID:slr0063. | 0.955 |
gspF | gspE-2 | gene:10499447 | gene:10500055 | General secretion pathway protein F; ORF_ID:slr0162. | General secretion pathway protein E; ORF_ID:slr0079. | 0.955 |
gspF | hofD | gene:10499447 | gene:10497497 | General secretion pathway protein F; ORF_ID:slr0162. | Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.885 |
gspF | pilC | gene:10499447 | gene:10499448 | General secretion pathway protein F; ORF_ID:slr0162. | Pilin biogenesis protein; ORF_ID:slr0163. | 0.998 |
gspF | pilM | gene:10499447 | gene:10499151 | General secretion pathway protein F; ORF_ID:slr0162. | Membrane protein; ORF_ID:slr1274. | 0.901 |
gspF | pilT | gene:10499447 | gene:10499319 | General secretion pathway protein F; ORF_ID:slr0162. | Twitching mobility protein; ORF_ID:sll1533. | 0.806 |
page 1 of 4