STRINGSTRING
cad protein (Synechocystis sp. PCC6803) - STRING interaction network
"cad" - Lysine decarboxylase in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadLysine decarboxylase (483 aa)    
Predicted Functional Partners:
speB2
Agmatine ureohydrolase (390 aa)
 
   
  0.902
speB1
Arginase (306 aa)
 
   
  0.902
sll1682
Alanine dehydrogenase (360 aa)
         
  0.861
slr0580
Hypothetical protein (415 aa)
 
          0.750
argD
N-acetylornithine aminotransferase (429 aa)
   
 
  0.692
morR
MorR protein (314 aa)
       
 
  0.686
moxR
MoxR protein (303 aa)
       
 
  0.685
pdxJ
Pyridoxine 5’-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5’-phosphate (PNP) and inorganic phosphate (241 aa)
              0.599
slr1192
Zinc-containing alcohol dehydrogenase family (336 aa)
         
  0.584
slr1780
Hypothetical protein (133 aa)
              0.562
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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