Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
pleD | slr0302 | gene:10497682 | gene:10500173 | PleD gene product; ORF_ID:slr1798. | ORF_ID:slr0302; PleD gene product homologue. | 0.568 |
pleD | slr0829 | gene:10497682 | gene:10500015 | PleD gene product; ORF_ID:slr1798. | ORF_ID:slr0829; PleD gene product homologue. | 0.542 |
pleD | slr1142 | gene:10497682 | gene:10498162 | PleD gene product; ORF_ID:slr1798. | ORF_ID:slr1142; unknown protein. | 0.497 |
pleD | slr1593 | gene:10497682 | gene:10497850 | PleD gene product; ORF_ID:slr1798. | ORF_ID:slr1593; hypothetical protein. | 0.916 |
pleD-3 | slr0302 | gene:10497892 | gene:10500173 | PleD; ORF_ID:slr1047. | ORF_ID:slr0302; PleD gene product homologue. | 0.560 |
pleD-3 | slr0829 | gene:10497892 | gene:10500015 | PleD; ORF_ID:slr1047. | ORF_ID:slr0829; PleD gene product homologue. | 0.587 |
pleD-3 | slr1142 | gene:10497892 | gene:10498162 | PleD; ORF_ID:slr1047. | ORF_ID:slr1142; unknown protein. | 0.857 |
pleD-3 | slr1593 | gene:10497892 | gene:10497850 | PleD; ORF_ID:slr1047. | ORF_ID:slr1593; hypothetical protein. | 0.964 |
sll1170 | slr0302 | gene:10499164 | gene:10500173 | ORF_ID:sll1170; hypothetical protein. | ORF_ID:slr0302; PleD gene product homologue. | 0.411 |
sll1170 | slr0829 | gene:10499164 | gene:10500015 | ORF_ID:sll1170; hypothetical protein. | ORF_ID:slr0829; PleD gene product homologue. | 0.416 |
sll1170 | slr1142 | gene:10499164 | gene:10498162 | ORF_ID:sll1170; hypothetical protein. | ORF_ID:slr1142; unknown protein. | 0.899 |
sll1170 | slr1143 | gene:10499164 | gene:10498163 | ORF_ID:sll1170; hypothetical protein. | ORF_ID:slr1143; hypothetical protein. | 0.856 |
sll1170 | slr1593 | gene:10499164 | gene:10497850 | ORF_ID:sll1170; hypothetical protein. | ORF_ID:slr1593; hypothetical protein. | 0.980 |
sll1673 | slr0302 | gene:10497661 | gene:10500173 | Regulatory components of sensory transduction system; ORF_ID:sll1673. | ORF_ID:slr0302; PleD gene product homologue. | 0.458 |
sll1673 | slr0829 | gene:10497661 | gene:10500015 | Regulatory components of sensory transduction system; ORF_ID:sll1673. | ORF_ID:slr0829; PleD gene product homologue. | 0.577 |
sll1673 | slr1142 | gene:10497661 | gene:10498162 | Regulatory components of sensory transduction system; ORF_ID:sll1673. | ORF_ID:slr1142; unknown protein. | 0.899 |
sll1673 | slr1593 | gene:10497661 | gene:10497850 | Regulatory components of sensory transduction system; ORF_ID:sll1673. | ORF_ID:slr1593; hypothetical protein. | 0.921 |
slr0302 | pleD | gene:10500173 | gene:10497682 | ORF_ID:slr0302; PleD gene product homologue. | PleD gene product; ORF_ID:slr1798. | 0.568 |
slr0302 | pleD-3 | gene:10500173 | gene:10497892 | ORF_ID:slr0302; PleD gene product homologue. | PleD; ORF_ID:slr1047. | 0.560 |
slr0302 | sll1170 | gene:10500173 | gene:10499164 | ORF_ID:slr0302; PleD gene product homologue. | ORF_ID:sll1170; hypothetical protein. | 0.411 |
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