STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1516ORF_ID:sll1516; unknown protein. (624 aa)    
Predicted Functional Partners:
slr0479
ORF_ID:slr0479; unknown protein.
 
 
   0.834
sll1939
ORF_ID:sll1939; unknown protein.
 
 
 0.831
lig-2
DNA ligase; ORF_ID:sll1583; gene:lig or ligA.
  
 
 0.807
recQ
ATP-dependent DNA helicase; DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 
 0.795
recA
RecA gene product; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.784
sll0072
ORF_ID:sll0072; unknown protein.
 
   
 0.780
sll1121
DNA helicase; ORF_ID:sll1121; unknown protein.
  
     0.775
slr1800
ORF_ID:slr1800; unknown protein.
  
     0.773
sll0066
ORF_ID:sll0066; unknown protein.
  
     0.773
ssl0788
ORF_ID:ssl0788; unknown protein.
  
     0.769
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.