Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
sll0702 | sll0710 | gene:10497536 | gene:10497521 | ORF_ID:sll0702; unknown protein. | ORF_ID:sll0710; unknown protein. | 0.899 |
sll0702 | sll1003 | gene:10497536 | gene:10497906 | ORF_ID:sll0702; unknown protein. | Sensory transduction histidine kinase; ORF_ID:sll1003. | 0.976 |
sll0710 | sll0702 | gene:10497521 | gene:10497536 | ORF_ID:sll0710; unknown protein. | ORF_ID:sll0702; unknown protein. | 0.899 |
sll0710 | sll1003 | gene:10497521 | gene:10497906 | ORF_ID:sll0710; unknown protein. | Sensory transduction histidine kinase; ORF_ID:sll1003. | 0.900 |
sll1003 | sll0702 | gene:10497906 | gene:10497536 | Sensory transduction histidine kinase; ORF_ID:sll1003. | ORF_ID:sll0702; unknown protein. | 0.976 |
sll1003 | sll0710 | gene:10497906 | gene:10497521 | Sensory transduction histidine kinase; ORF_ID:sll1003. | ORF_ID:sll0710; unknown protein. | 0.900 |
sll1003 | sll1228 | gene:10497906 | gene:10498957 | Sensory transduction histidine kinase; ORF_ID:sll1003. | Hybrid sensory kinase; ORF_ID:sll1228. | 0.932 |
sll1003 | sll1905 | gene:10497906 | gene:10498754 | Sensory transduction histidine kinase; ORF_ID:sll1003. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.983 |
sll1003 | slr1142 | gene:10497906 | gene:10498162 | Sensory transduction histidine kinase; ORF_ID:sll1003. | ORF_ID:slr1142; unknown protein. | 0.908 |
sll1003 | slr1143 | gene:10497906 | gene:10498163 | Sensory transduction histidine kinase; ORF_ID:sll1003. | ORF_ID:slr1143; hypothetical protein. | 0.934 |
sll1003 | slr1213 | gene:10497906 | gene:10498258 | Sensory transduction histidine kinase; ORF_ID:sll1003. | AraC subfamily; ORF_ID:slr1213. | 0.899 |
sll1003 | slr1305 | gene:10497906 | gene:10497716 | Sensory transduction histidine kinase; ORF_ID:sll1003. | Regulatory components of sensory transduction system; ORF_ID:slr1305. | 0.894 |
sll1003 | slr1759 | gene:10497906 | gene:10497917 | Sensory transduction histidine kinase; ORF_ID:sll1003. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.950 |
sll1003 | slr2104 | gene:10497906 | gene:10498868 | Sensory transduction histidine kinase; ORF_ID:sll1003. | Hybrid sensory kinase; ORF_ID:slr2104. | 0.930 |
sll1228 | sll1003 | gene:10498957 | gene:10497906 | Hybrid sensory kinase; ORF_ID:sll1228. | Sensory transduction histidine kinase; ORF_ID:sll1003. | 0.932 |
sll1228 | sll1905 | gene:10498957 | gene:10498754 | Hybrid sensory kinase; ORF_ID:sll1228. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.993 |
sll1228 | slr1142 | gene:10498957 | gene:10498162 | Hybrid sensory kinase; ORF_ID:sll1228. | ORF_ID:slr1142; unknown protein. | 0.901 |
sll1228 | slr1143 | gene:10498957 | gene:10498163 | Hybrid sensory kinase; ORF_ID:sll1228. | ORF_ID:slr1143; hypothetical protein. | 0.876 |
sll1228 | slr1213 | gene:10498957 | gene:10498258 | Hybrid sensory kinase; ORF_ID:sll1228. | AraC subfamily; ORF_ID:slr1213. | 0.886 |
sll1228 | slr1305 | gene:10498957 | gene:10497716 | Hybrid sensory kinase; ORF_ID:sll1228. | Regulatory components of sensory transduction system; ORF_ID:slr1305. | 0.925 |
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