STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll0982ORF_ID:sll0982; unknown protein. (128 aa)    
Predicted Functional Partners:
kpsT
Polysialic acid transport ATP-binding protein; ORF_ID:slr2108.
      
 0.891
sll0983
ORF_ID:sll0983; unknown protein.
     
 0.879
sll0981
ORF_ID:sll0981; unknown protein.
     
 0.850
slr1299
UDP-glucose dehydrogenase; ORF_ID:slr1299.
      
 0.821
sll0984
ORF_ID:sll0984; unknown protein.
      
 0.804
slr0328
Low molecular weight phosphotyrosine protein phosphatase; ORF_ID:slr0328.
      
 0.780
sll0985
ORF_ID:sll0985; unknown protein.
      
 0.709
kpsM
Polysialic acid transport protein; ORF_ID:slr2107.
      
 0.679
slr1393
Sensory transduction histidine kinase; ORF_ID:slr1393.
      
 0.676
slr0326
ORF_ID:slr0326; unknown protein.
      
 0.546
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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