STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndhDNADH dehydrogenase subunit 4; ORF_ID:slr2007. (487 aa)    
Predicted Functional Partners:
slr2006
ORF_ID:slr2006; hypothetical protein.
 
 
 0.999
slr2010
ORF_ID:slr2010; unknown protein.
 
 0.999
ssr3410
ORF_ID:ssr3410; unknown protein.
 
 
 0.998
slr2012
ORF_ID:slr2012; unknown protein.
 
 
 0.998
slr2008
ORF_ID:slr2008; hypothetical protein.
 
 
 0.990
ndhF-4
NADH dehydrogenase subunit 5; ORF_ID:sll0026.
 
 
 0.980
ndhF-2
NADH dehydrogenase subunit 5; ORF_ID:sll1732.
 
 
 0.978
ssr3409
ORF_ID:ssr3409; unknown protein.
 
   
 0.971
slr2011
ORF_ID:slr2011; unknown protein.
 
 
 0.945
ndhF-3
NADH dehydrogenase subunit 5; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 5 family.
 
 
0.914
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.