STRINGSTRING
speB2 protein (Synechocystis sp. PCC6803) - STRING interaction network
"speB2" - Agmatine ureohydrolase in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speB2Agmatine ureohydrolase (390 aa)    
Predicted Functional Partners:
speA1
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine (695 aa)
   
  0.994
speA2
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine (659 aa)
   
  0.991
argD
N-acetylornithine aminotransferase (429 aa)
   
  0.906
cad
Lysine decarboxylase (483 aa)
 
   
  0.902
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase (990 aa)
   
 
  0.899
speB1
Arginase (306 aa)
   
   
0.897
hypA2
Hypothetical protein; Probably plays a role in a hydrogenase nickel cofactor insertion step (120 aa)
 
     
  0.866
sll1080
Hypothetical protein (352 aa)
 
     
  0.843
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (469 aa)
   
 
  0.814
napC
Carboxynorspermidine decarboxylase (387 aa)
   
 
  0.801
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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