STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1144Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (305 aa)    
Predicted Functional Partners:
sll0818
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
   
 0.944
sll0162
ORF_ID:sll0162; unknown protein.
  
   
 0.905
ftsI
Penicillin-binding protein; ORF_ID:sll1833; gene:ftsI or pbpB.
  
 0.862
sll1496
Mannose-1-phosphate guanyltransferase; ORF_ID:sll1496.
  
 
 0.850
sll0914
ORF_ID:sll0914; unknown protein.
      
 0.811
truA
Pseudouridine synthase 1; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
 
 
 0.810
rps9
30S ribosomal protein S9; ORF_ID:sll1822; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.790
rps6
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.783
rps15
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
 
 
 
 0.781
rps16
30S ribosomal protein S16; ORF_ID:ssr0482; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.763
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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