STRINGSTRING
slr1440 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr1440" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1440Hypothetical protein (143 aa)    
Predicted Functional Partners:
glcD
Glycolate oxidase subunit GlcD (492 aa)
     
 
    0.663
glcE
Glycolate oxidase subunit GlcE (434 aa)
     
 
    0.643
slr0806
Hypothetical protein (439 aa)
     
 
    0.635
dnaX
DNA polymerase III subunit (1116 aa)
              0.593
glcF
Glycolate oxidase subunit (Fe-S) protein (460 aa)
     
 
    0.586
slr1900
Hypothetical protein (247 aa)
   
          0.494
slr1186
Hypothetical protein (148 aa)
   
          0.416
slr0224
Hypothetical protein (231 aa)
   
          0.416
sll0174
Hypothetical protein (284 aa)
   
          0.412
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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