STRINGSTRING
slr1444 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr1444" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1444Hypothetical protein (333 aa)    
Predicted Functional Partners:
SYNGTS_2057
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (345 aa)
       
      0.871
slr1376
Hypothetical protein (110 aa)
   
          0.729
cpcF
Phycocyanin alpha phycocyanobilin lyase CpcF; Required for the chromophorylation of the cpcA gene product (214 aa)
   
          0.685
sll1734
Hypothetical protein (431 aa)
   
          0.671
slr1590
Hypothetical protein (295 aa)
   
          0.632
slr1923
Hypothetical protein (398 aa)
   
          0.601
sll0400
Hypothetical protein (164 aa)
 
          0.546
sll0497
Hypothetical protein (275 aa)
   
          0.525
ppx
Exopolyphosphatase (540 aa)
 
          0.520
slr0730
Hypothetical protein (132 aa)
   
          0.519
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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