STRINGSTRING
slr1875 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr1875" - Exopolysaccharide synthesis protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1875Exopolysaccharide synthesis protein (212 aa)    
Predicted Functional Partners:
slr0723
Hypothetical protein (363 aa)
   
          0.673
ddl
D-alanine-D-alanine ligase-related protein; Cell wall formation (354 aa)
         
  0.615
ssr3184
Ferredoxin (75 aa)
   
     
  0.593
sll0931
Hypothetical protein (156 aa)
   
          0.569
slr1094
Hypothetical protein (261 aa)
   
          0.547
slr2059
Ferredoxin (134 aa)
           
  0.534
ssl2559
Ferredoxin (98 aa)
           
  0.534
slr0554
Hypothetical protein (1036 aa)
   
          0.529
slr2010
Hypothetical protein (130 aa)
   
          0.523
slr1178
Hypothetical protein (155 aa)
   
          0.485
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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