STRINGSTRING
cefD protein (Synechocystis sp. PCC6803) - STRING interaction network
"cefD" - Isopenicillin N epimerase in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cefDIsopenicillin N epimerase (401 aa)    
Predicted Functional Partners:
SYNGTS_0100
NifS protein (391 aa)
 
 
  0.987
slr1419
Hypothetical protein (159 aa)
   
  0.974
slr0076
Hypothetical protein (453 aa)
   
  0.918
slr0074
Fe-S assembly protein SufB (480 aa)
   
  0.918
SYNGTS_2145
NifS protein (386 aa)
 
 
0.871
slr0075
ABC transporter subunit Ycf16 (256 aa)
   
 
  0.869
moeB
Molybdopterin biosynthesis protein MoeB (392 aa)
   
 
  0.857
ssl2667
NifU protein (76 aa)
   
 
  0.851
cysT
Sulfate transport system permease protein; Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane (By similarity) (286 aa)
         
  0.842
csd
NifS protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (420 aa)
   
   
0.812
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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