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SYNGTS_1217 protein (Synechocystis sp. PCC6803) - STRING interaction network
"SYNGTS_1217" - RNA polymerase sigma-E factor in Synechocystis sp. PCC6803
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNGTS_1217RNA polymerase sigma-E factor (186 aa)    
Predicted Functional Partners:
sll0858
Hypothetical protein (197 aa)
 
          0.923
sll0857
Hypothetical protein (138 aa)
              0.859
slr1546
Hypothetical protein (212 aa)
     
 
  0.780
sll0267
Hypothetical protein (1578 aa)
         
  0.626
sll0687
Hypothetical protein (185 aa)
   
          0.576
rpoC2
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1317 aa)
       
 
  0.546
sll0782
Putative protein kinase (369 aa)
 
     
  0.529
sll0855
Hypothetical protein (451 aa)
              0.522
sll0854
Hypothetical protein (308 aa)
              0.515
rpoC1
RNA polymerase gamma-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (626 aa)
       
 
  0.508
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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